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• • Jitendra Narayan@admin

  

  Jitendra Narayan is now a friend with Sanchari Sircar 2779 days ago

  • Jitendra Narayan@admin

  

  • Sanchari Sircar@Sanchari

  
• • Sanchari Sircar@Sanchari

  

  Sanchari Sircar is now a friend with Jitendra Narayan 2779 days ago

  • Sanchari Sircar@Sanchari

  

  • Jitendra Narayan@admin

  
• • BioStar@biostar

  

  BioStar uploaded the file Evaluation of genome assembly software based on long reads 2780 days ago

  TGS technologies have been used to produce highly accurate de novo assemblies of hundreds of microbial genomes and highly contiguous reconstructions of many dozens of plant and animal genomes, enabling new insights into evolution and sequence...
• • BioStar@biostar

  

  BioStar posted to the wire 2780 days ago

  The aim of this program suite is to support checks of #Sequence #Variant #Nomenclature according to the guidelines of the #Human #Genome #Variation Society. https://www.mutalyzer.nl/
• • Jit@jit.aber

  

  Jit posted to the wire 2780 days ago

  Where is genomics going next? https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1626-2 #Next #Genomics #Future
• • BioJoker@biojoker

  

  BioJoker posted a new ad in the Opportunity Computer scientist/bioinformatician at IEO in Milan, Italy 2781 days ago
• • Rahul Nayak@rahul

  

  Rahul Nayak posted to the wire 2781 days ago

  This script will #extract the intron feature #gff3 and sequence from gene_exon gff3 and fasta file. Extract-intron-from-gff3
• • Jit@jit.aber

  

  Jit posted to the wire 2781 days ago

  Genome Information by Organism https://www.ncbi.nlm.nih.gov/genome/browse/#!/overview/ #Genome #information #NCBI
• • Jit@jit.aber

  

  Jit bookmarked nQuire: A statistical framework for ploidy estimation using NGS short-read data 2781 days ago

  nQuire implements a set of commands to estimate ploidy level of individuals from species, where recent polyploidization occurred and intraspecific ploidy variation is observed. Specifically, nQuire uses next-generation sequencing data to distinguish...

  https://github.com/clwgg/nQuire
• • BioJoker@biojoker

  

  BioJoker posted to the wire 2782 days ago

  #Polishing PacBio assemblies with Arrow and Pilon https://flowersoftheocean.wordpress.com/2018/04/16/polishing-pacbio-assemblies-with-arrow-and-pilon/ #polish #Pilon
• • Jit@jit.aber

  

  Jit posted to the wire 2782 days ago

  #Database resources of the National Center for Biotechnology Information https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531099/ #NCBI
• • BioStar@biostar

  

  BioStar bookmarked UpSetR: An R Package for the Visualization of Intersecting Sets and their Properties 2784 days ago

  UpSetR generates static UpSet plots. The UpSet technique visualizes set intersections in a matrix layout and introduces aggregates based on groupings and queries. The matrix layout enables the effective representation of associated data,...

  https://github.com/hms-dbmi/UpSetR/
• • BioJoker@biojoker

  

  BioJoker posted to the wire 2784 days ago

  Biotechnology scientist jobs at http://www.dbtindia.nic.in/vacancies/ #Job #Biotechnology #DBTIndia #DBT
• • BioJoker@biojoker

  

  BioJoker posted a new ad in the Opportunity Research opening @ IBAB, Bengaluru 2784 days ago
• • Jit@jit.aber

  

  Jit posted to the wire 2784 days ago

  for i in $(ls *.ab1); do convert_trace -out_format scf < $i > ${i%.ab1*}.scf; done #Convert #AB12SCF #SCF #AB1
• • Neel@neelam

  

  Neel posted to the wire 2785 days ago

  (smrttools) ➜ allBam for i in *.bam; do bamtools convert -format fasta -in $i -out $i.fasta; done #Convert #fasta
• • Rahul Nayak@rahul

  

  Rahul Nayak bookmarked GRAbB: Selective Assembly of Genomic Regions, a New Niche for Genomic Research 2786 days ago

  GRAbB is shown to be more efficient than MITObim in terms of speed, memory and disk usage. The other functionalities (handling multiple targets simultaneously and extracting homologous regions) of the new program are not matched by other programs....

  https://github.com/b-brankovics/grabb
• • Jit@jit.aber

  

  Jit bookmarked Genome assembly forensics: finding the elusive mis-assembly 2786 days ago

  We present the first collection of tools aimed at automated genome assembly validation. This work formalizes several mechanisms for detecting mis-assemblies, and describes their implementation in our automated validation pipeline,...

  http://amos.sourceforge.net/wiki/index.php/AMOS
• • Rahul Nayak@rahul

  

  Rahul Nayak posted to the wire 2786 days ago

  A De Novo Genome #Assembly Algorithm for #Repeats and Nonrepeats https://www.hindawi.com/journals/bmri/2014/736473/
• • Neel@neelam

  

  Neel commented on a bookmark List of Bioinformatics Vacancy, Jobs, Opportunity websites 2788 days ago

  Biotechnology jobs in India http://www.dbtindia.nic.in/vacancies/

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