BOL: All Site Activity

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- Jit@jit.aber
Jit bookmarked MFannot : a program for the annotation of mitochondrial and plastid genomes 1920 days ago

MFannot is a program for the annotation of mitochondrial and plastid genomes MFannot is a program for the annotation of mitochondrial and plastid genomes. It is a PERL wrapper around a set of diverse, external independent tools. It makes intense...

https://github.com/BFL-lab/Mfannot
- Jit@jit.aber
Jit bookmarked Gepard: allows the calculation of dotplots even for large sequences like chromosomes or bacterial... 1920 days ago

Gepard (German: "cheetah", Backronym for "GEnome PAir - Rapid Dotter") allows the calculation of dotplots even for large sequences like chromosomes or bacterial genomes. Reference: Krumsiek J, Arnold R, Rattei T. Gepard: A rapid and sensitive tool...

https://github.com/univieCUBE/gepard
- Jit@jit.aber
Jit published a news post BLAST nr version 5 database, (nr_v5) 1923 days ago

We have made changes the nr version 5 database, (nr_v5), to facilitate better search results and improved performance by reducing the number of redundant titles in the nr_v5 database used by webBLAST, which is also available for BLAST+ users.
Comments
- biogeek@biogeek
  
  biogeek 1589 days ago
  Blast database version5 tutorial https://ftp.ncbi.nlm.nih.gov/blast/db/v5/blastdbv5.pdf
- Jit@jit.aber
Jit posted to the wire 1924 days ago

Alignment-free sequence comparison: benefits, applications, and tools https://genomebiology.biomedcentral.com/articles/10.1186/s13059-017-1319-7 #Alignment #Sequence
- Jit@jit.aber
Jit posted to the wire 1924 days ago

Software tools for visualizing Hi-C data https://genomebiology.biomedcentral.com/articles/10.1186/s13059-017-1161-y #HiC #3C
- Jit@jit.aber
Jit bookmarked TRITEX sequence assembly pipeline for Triticeae genomes 1926 days ago

The pipeline is open-source and hosted in a public Bitbucket repository. TRITEX has been run on highly inbred genotypes of barley (Hordeum vulgare), tetraploid wheat (Triticum turgidum) and hexaploid wheat (T. aestivum) with reasonable...

https://tritexassembly.bitbucket.io/
- Jit@jit.aber
Jit created a new bio-script Run sspace ! 1929 days ago
- Jit@jit.aber
Jit created a new bio-script Map the long reads 1931 days ago
- Abhimanyu Singh@abhimanyu
Abhimanyu Singh created a new bio-script Convert FASTQ to FASTQ 1931 days ago
- Jit@jit.aber
Jit bookmarked dnaPipeTE: a pipeline designed to find, annotate and quantify Transposable Elements 1934 days ago

dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs...

https://github.com/clemgoub/dnaPipeTE
- Jit@jit.aber
Jit posted to the wire 1934 days ago

Progressive alignment with Cactus: a multiple-genome aligner for the thousand-genome era https://www.biorxiv.org/content/biorxiv/early/2019/08/09/730531.full.pdf #Alignment #Cactus
- Jit@jit.aber
Jit bookmarked Cactus: a reference-free whole-genome multiple alignment program 1934 days ago

Cactus is a reference-free whole-genome multiple alignment program. The principal algorithms are described here: https://doi.org/10.1101/gr.123356.111 Cactus uses substantial resources. For primate-sized genomes (3 gigabases each), you should...

https://github.com/ComparativeGenomicsToolkit/cactus
- BioStar@biostar
BioStar published a news post JNU openings ! 1938 days ago

Opening for Faculty positions (Assistant Professor, Associate Professor and Professor)
- Abhimanyu Singh@abhimanyu
Abhimanyu Singh bookmarked The Extensive de novo TE Annotator (EDTA) 1938 days ago

The EDTA package was designed to filter out false discoveries in raw TE candidates and generate a high-quality non-redundant TE library for whole-genome TE annotations. Selection of initial search programs were based on benckmarkings on the...

https://github.com/oushujun/EDTA
- Rahul Agarwal@raag
Rahul Agarwal posted a new ad in the ResearchLabs Prof. Dr. med. Andreas Ramming 1939 days ago
- Rahul Agarwal@raag
Rahul Agarwal posted a new ad in the Opportunity Data Scientist (m/w/d) 1939 days ago
- Rahul Agarwal@raag
Rahul Agarwal posted a new ad in the Opportunity Naturwissenschaftlicher Doktorand (m/w/d) phd student 1939 days ago
- Rahul Agarwal@raag
Rahul Agarwal posted a new ad in the Opportunity Post-Doc position in Immunology 1939 days ago
- Jit@jit.aber
Jit commented on the blog Important Journals, Blogs and Forums for Bioinformaticians 1940 days ago

cell-systems journal also accept tools papers https://www.cell.com/cell-systems/home
- Jit@jit.aber
Jit bookmarked gVolante: Completeness Assessment of Genome/Transcriptome Sequences 1940 days ago

gVolante provides an online interface for completeness assessment of user’s original or publicly available sequence datasets as well as for browsing results of completeness assessment performed on publicly available genome and...

https://gvolante.riken.jp/

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