BOL: All Site Activity

All Site Activity

- BioStar@biostar
BioStar bookmarked BUSCA: an integrative web server to predict subcellular localization of proteins 2164 days ago

BUSCA (Bologna Unified Subcellular Component Annotator) is a web-server for predicting protein subcellular localization. BUSCA integrates different tools to predict localization-related protein features (DeepSig, TPpred3, PredGPI and ENSEMBLE3.0) as...

http://busca.biocomp.unibo.it/
- Jit@jit.aber
Jit posted to the wire 2166 days ago

samtools view -Sb pilonCor_round1.fasta.out.sam | samtools sort -m 4G -@ 40 -o pilonCor_round1.fasta.out.sorted.bam - && samtools index -@ 40 pilonCor_round1.fasta.out.sorted.bam #SAM2BAM
- BioJoker@biojoker
BioJoker posted to the wire 2166 days ago

set the path for python alias python="/usr/bin/python3.3" #python #path #set
- Jit@jit.aber
Jit posted to the wire 2167 days ago

samtools mpileup -uf reference.nt mapping.bam | bcftools call -c | vcfutils.pl vcf2fq > consensus.fasta #Genome #Assembly #Reference
- BioStar@biostar
BioStar bookmarked wtdbg2: A fuzzy Bruijn graph approach to long noisy reads assembly 2167 days ago

Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and then builds the consensus from intermediate assembly...

https://github.com/ruanjue/wtdbg2
- Sanchari Sircar@Sanchari
Sanchari Sircar has a new avatar 2170 days ago
- Sanchari Sircar@Sanchari
Sanchari Sircar joined the group bioinfoirmatics study - research partner 2170 days ago
- Jitendra Narayan@admin
Jitendra Narayan is now a friend with Sanchari Sircar 2170 days ago
Jitendra Narayan@admin
Sanchari Sircar@Sanchari
- Sanchari Sircar@Sanchari
Sanchari Sircar is now a friend with Jitendra Narayan 2170 days ago
Sanchari Sircar@Sanchari
Jitendra Narayan@admin
- BioStar@biostar
BioStar uploaded the file Evaluation of genome assembly software based on long reads 2170 days ago

TGS technologies have been used to produce highly accurate de novo assemblies of hundreds of microbial genomes and highly contiguous reconstructions of many dozens of plant and animal genomes, enabling new insights into evolution and sequence...
- BioStar@biostar
BioStar posted to the wire 2170 days ago

The aim of this program suite is to support checks of #Sequence #Variant #Nomenclature according to the guidelines of the #Human #Genome #Variation Society. https://www.mutalyzer.nl/
- Jit@jit.aber
Jit posted to the wire 2170 days ago

Where is genomics going next? https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1626-2 #Next #Genomics #Future
- BioJoker@biojoker
BioJoker posted a new ad in the Opportunity Computer scientist/bioinformatician at IEO in Milan, Italy 2171 days ago
- Rahul Nayak@rahul
Rahul Nayak posted to the wire 2171 days ago

This script will #extract the intron feature #gff3 and sequence from gene_exon gff3 and fasta file. Extract-intron-from-gff3
- Jit@jit.aber
Jit posted to the wire 2171 days ago

Genome Information by Organism https://www.ncbi.nlm.nih.gov/genome/browse/#!/overview/ #Genome #information #NCBI
- Jit@jit.aber
Jit bookmarked nQuire: A statistical framework for ploidy estimation using NGS short-read data 2171 days ago

nQuire implements a set of commands to estimate ploidy level of individuals from species, where recent polyploidization occurred and intraspecific ploidy variation is observed. Specifically, nQuire uses next-generation sequencing data to distinguish...

https://github.com/clwgg/nQuire
- BioJoker@biojoker
BioJoker posted to the wire 2172 days ago

#Polishing PacBio assemblies with Arrow and Pilon https://flowersoftheocean.wordpress.com/2018/04/16/polishing-pacbio-assemblies-with-arrow-and-pilon/ #polish #Pilon
- Jit@jit.aber
Jit posted to the wire 2172 days ago

#Database resources of the National Center for Biotechnology Information https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531099/ #NCBI
- BioStar@biostar
BioStar bookmarked UpSetR: An R Package for the Visualization of Intersecting Sets and their Properties 2174 days ago

UpSetR generates static UpSet plots. The UpSet technique visualizes set intersections in a matrix layout and introduces aggregates based on groupings and queries. The matrix layout enables the effective representation of associated data,...

https://github.com/hms-dbmi/UpSetR/
- BioJoker@biojoker
BioJoker posted to the wire 2174 days ago

Biotechnology scientist jobs at http://www.dbtindia.nic.in/vacancies/ #Job #Biotechnology #DBTIndia #DBT

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