BOL

HECIL—Hybrid Error Correction with Iterative Learning—a hybrid error correction framework that determines a correction policy for erroneous long reads, based on optimal combinations of decision weights obtained from short read...

Genome sequencing remains an inexact science, and genome sequences can contain significant errors if they are not carefully examined. Hawkeye is our new visual analytics tool for genome assemblies, designed to aid in identifying and correcting...

REACTOME is an open-source, open access, manually curated and peer-reviewed pathway database. Our goal is to provide intuitive bioinformatics tools for the visualization, interpretation and analysis of pathway knowledge to support basic and clinical...

TIGER: tiled iterative genome assembler https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3526431/ #genome #assembly #tool

Ten quick tips for sharing open genomic data https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006472 #data #tips #genomics

Overlapping gene lists can reveal biological meanings and may lead to novel hypotheses. For example, histone modification is an important cellular mechanism that can pack and re-pack chromatin. By making the chromatin structure more dense or loose,...

This tutorial is useful https://blogs.oracle.com/linux/the-top-10-tricks-of-perl-one-liners-v2

The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License. The source code can be found at https://github.com/wdecoster/nanopack, together with links to separate scripts and their documentation. The scripts are compatible...

Cells accept bioinformatics papers https://www.mdpi.com/journal/cells/special_issues/bioinformatics_cells

quantumzyme in india http://quantumzyme.com/

QUAST-LG is an extension of QUAST intended for evaluating large-scale genome assemblies (up to mammalian-size). QUAST-LG is included in the QUAST  package starting from version 5.0.0 (download the latest release). Run QUAST as...

Is It #Ordered Correctly? #Validating #Genome #Assemblies by Optical Mapping http://www.plantcell.org/content/30/1/7

Genome assembly tutorial https://astrobiomike.github.io/genomics/de_novo_assembly

Nucleus journal accept bioinformatics tool and software papers https://www.springer.com/life+sciences/cell+biology/journal/13237

MAKER is a great tool for annotating a reference genome using empirical and ab initiogene predictions. GMOD, the umbrella organization that includes MAKER, has some nice tutorials online for running MAKER. However, these were quite...

Gene prediction tools http://genome.crg.es/courses/laCaixa05/Prediction/index.html #Genes #Predicts