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genome.edu.au - RNA Seq Basic Galaxy Tutorial RNA-Seq tutorial based on Trapnell et al. (2012) Nature Protocols In this tutorial we cover the concepts of RNA-Seq differential gene expression (DGE) analysis using a very small synthetic dataset from a well...

This tutorial is intended to introduce users quickly to the basics of R, focusing on a few common tasks that  biologists need to perform  some basic analysis:  load a table, plot some graphs, and perform some basic statistics. More...

R 3.2.0 (codename “Full of Ingredients”) was released yesterday.

microscope.readthedocs.org - Microscope Platform user documentation. The MicroScope platform is available at this URL: https://www.genoscope.cns.fr/agc/microscope

www.rstudio.com - Devtools makes package development a breeze: it works with R’s existing conventions for code structure, adding efficient tools to support the cycle of package development. With devtools, developing a package becomes so easy that it will be...

github.com - This is not so much an instructional manual, but rather notes, tables, and examples for Python syntax. It was created by the author as an additional resource during training, meant to be distributed as a physical notebook. Participants (who favor...

github.com - ComplexHeatmap (Gu, Eils, and Schlesner (2016)) is an R Programming Language (R Core Team (2020)) package that is currently listed in the Bioconductor package repository. install and load required packages...

bioinformatics.uconn.edu - This section explains some of the commonly used file formats in bioinformatics. The information provided here is basic and designed to help users to distinguish the difference between different formats. Please refer user manual or other information...

bioinformaticsworkbook.org - This books assumes that the reader has some knowledge of biology and basic understanding of the Unix command line. However, for the beginner, the appendix contains introductory material and tips/tricks for common bioinformatic problems, that is...

carpentries-incubator.github.io - A lesson introducing the Snakemake workflow system for bioinformatics analysis. Prerequisites This is an intermediate lesson and assumes learners have already done some bioinformatics: Familiarity with the BASH command shell, including...