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PHYMMBL
By Jit 2995 days agowww.cbcb.umd.edu - Metagenomics sequencing projects collect samples of DNA from uncharacterized environments that may contain hundreds or even thousands of species. One of the main challenges in analyzing a metagenome is phylogenetic classification of raw sequence...A Beginner's Guide to Using Kraken for Taxonomic Classification
By Neel 9 days agoKraken is a versatile and efficient tool for taxonomic classification in metagenomics. Its speed, accuracy, and flexibility make it a favorite among bioinformaticians. By following this guide, you can set up and use Kraken to unlock insights into...CLARK: Fast, accurate and versatile sequence classification system
By Jit 1773 days agoclark.cs.ucr.edu - CLARK, a method based on a supervised sequence classification using discriminative k-mers. Considering two distinct specific classification problems (see the article for details), namely (1) the taxonomic classification of metagenomic reads to...Tiara: deep learning-based classification system for eukaryotic sequences
By Rahul Nayak 1014 days agoacademic.oup.com - With a large number of metagenomic datasets becoming available, eukaryotic metagenomics emerged as a new challenge. The proper classification of eukaryotic nuclear and organellar genomes is an essential step toward a better understanding of...Metabuli 분리 improves metagenomic read classification
By Abhi 568 days agogithub.com - Metabuli 분리 improves metagenomic read classification through metamers, DNA-AA k-mers, to be sensitive and specific, recovering 99% and 98% of DNA or AA classifiers. Metabuli is metagenomic classifier that jointly analyze both DNA and amino...Pango Lineage Analysis !
By Abhi 1134 days agocov-lineages.org - The Pango nomenclature is being used by researchers and public health agencies worldwide to track the transmission and spread of SARS-CoV-2, including variants of concern. This website documents all current Pango lineages and their spread, as well...RNAcon: web-server for the prediction and classification of non-coding RNAs
By Shruti Paniwala 2716 days agocrdd.osdd.net - RNAcon is a web-server for the prediction and classification of non-coding RNAs. It uses SVM-based model for the discrimination between coding and ncRNAs and RandomForest-based prediction model for the classification of ncRNAs into different...CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
By Jit 1679 days agogithub.com - Contig Annotation Tool (CAT) and Bin Annotation Tool (BAT) are pipelines for the taxonomic classification of long DNA sequences and metagenome assembled genomes (MAGs/bins) of both known and (highly) unknown microorganisms, as generated by...Understanding DUMP files from NCBI Taxonomy database !
By Shruti Paniwala 892 days agoTaxonomy database !Mosquito species known for transmitting the Dengue virus
By BioStar 264 days agoHere is a list of mosquito species known for transmitting the Dengue virus along with essential and applied information about each species:
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