Results for "detect"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...HSB) amongst species. Some of them which were commonly used for synteny detections are: SyntenyTracker ( ht...ww.lgm.upmc.fr/CHROnicle/SynChro.html) MicroSyn software as a means of detecting microsynteny in adjacent g...2626 days ago
- ...Sequencing (NGS) based approaches increase the sensitivity of mutation detection, making it fast and cost-e...Indian cohort data, where NGS based tests have shown improved mutation detection. In this webinar, we will...
2819 days ago
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Bookmarks
- A program to detect recombination hotspots using population genetic data. More at https://github.com/auton1/LDhot
3031 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
...re is currently alpha level, feel free to use and report issues encountered. Canu is a hierachical assembly pipeline which runs in four steps: Detect overlaps in high-noise sequen...2930 days ago
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Files
Detect the sequence pattern and its location in fasta file with match and mismatches information.
This script is one of my old script to detect some centromeric pattern in chromosomes. User can also control the number of mismatches allowed through command line .. To run: perl centro.pl3884 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...ng the string graph. MindTheGap 1.0.0 – Detection and Assembly of Insertion...ntsMindTheGap is a software that performs detection and assembly of DNA insert...sfrags are more complete. Quake 0.3.5 – Detect & Correct Substitution Se...2701 days ago
Awesome perl frameworks, libraries and software - PART 4
.... vti/showmetheshell - HTML5 WebSocket Shell oalders/http-browserdetect - Determine the Web brow.../moedict-mac - 轉換教育部國語辭典為 Mac 內建字典 tokuhirom/cpan-outdated - detect outdated CPAN modules openwe...2510 days ago
Top-level pages
- ...nctional annotation in the comparison of whole genomes. Several methods detect glycolysation, myristylation...ion of gene order or operon organisation in different genomes. Also the detection of gene fusion and gene fi...
3963 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...es a reference sequence] Quake: quality-aware detection and correction of sequenci...and Beyond: new and improved methodologies to detect and characterize protein-DNA...ge] Comparing genomes and assemblies; variant detection Versatile and open softw...3795 days ago
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Wire posts
News
DNA Bending Propensity in the Presence of Base Mismatches: Implications for DNA Repair
...G:A, G:G, T:T, A:A, A+:C) vs. non-defective DNA (containing A:T or G:C base pairs). DNA repair mechanisms likely take advantage of this feature to detect defective DNA based on an inc...3927 days ago
- ...on on symptoms, prevention, early detection, and treatment. Cancer rat...cancer mortality worldwide. Early detection has been proven to improve...w non-communicable diseases to be detect at early stage, which will be...gy can also easily be modified to detect multiple types of peptides re...
3737 days ago
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Opportunity posts
- ...proaches to associate genomic to phenotypic differences [1-8]. The postdoc will join our efforts to extend our methods repertoire to accurately detect additional types of genomic c...
1297 days ago
ResearchLabs posts
- ...cture and function. Proteins with very similar amino acid sequence are "no-brainers", but the real test, which our group largely focuses on, is to detect the "essential" similarity in...
3901 days ago
Video
04- Informatics Approach to Cancer - Interview with Dr. Joel Saltz
...es applying computer analysis to medical imaging to yield better results for patients. As an example, a computer program may able to help doctors detect small cancers in a CT scan or...3879 days ago
Bio-Scripts
Install Parrot Virtual Machine !
...C compiler actually Visual C++..........skipped. auto::attributes - Detect compiler attributes.............e whether there is socklen_t................yes. auto::stat - Detect stat type.......................1553 days ago
- ...ng machine data, e.g. Illumina base calls, and detect sequencing level attributes,...Tools that analyze read coverage to detect copy number variants. An.... microbial community composition and pathogen detection PathSeqBuildKmers...
2091 days ago
Tags
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material between two organisms” , is relatively common in prokaryotes and single-celled eukaryotes, but a number of factors combine to make it far rarer in multicellular eukaryotes. In order for a eukaryotic spec...Tags: Tools, detect, horizontal, gene, transfer, HGT, genomes
866 days ago
Comments
Comment on "Recombination detection tool"
Using population genomic data http://arxiv.org/ftp/arxiv/papers/1403/1403.4264.pdf to detect recombination hotspot.3030 days ago
Comment on "Does anyone have Nanopore latest updates?"
Nanopore DNA sequencing technology can diagnose infection and detect drug-resistance http://www.laboratorytalk.com/news/usb-stick-could-revolutionise-gene-sequencing/407180.article3432 days ago
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