3724 days ago
1137 days ago
Five unique traits of effective computational biologist
...have an open mind to sources of knowledge that others may shut out. In other concrete term, the bad biological programmer learn Perl's regular expression when they started a project o...3948 days ago
List of gene ontology software and tools
...hment job for experimental biologists to identify enriched Gene Ontology (GO) terms in a list of microarray probe sets or gene identifiers (with expression information for PAGE analysis...3707 days ago
Well designed regular expression cheat sheet
In our computational biology work, we mostly play with DNA or AA string. For string based programming work this regular expression cheat sheet is really helpful. Keep it handy.3947 days ago
List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.3943 days ago
Regular Expression Cheat Sheet
The Regular Expression are the sole of Perl language, and for bioinfor...did not find any good and user friendly regular expression cheat sheet, hence write our own cheat sheet. The Regular Expressions Cheat Sheet, a quick referen...3950 days ago
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Genome Assembly Tools and Software - PART2 !!
...m to assemble transcripts and estimate their expression levels from RNA-Seq reads. C...1 – Transcriptome Assembly and Isoform Expression Level Estimation from Biased...reference genome, across a broad spectrum of expression values and in presence of alt...2683 days ago
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R package for visualising GO enrichment
...and arranges them together with figures of experimental data. This allows us to draw informative summary plots for analyses such as differential expression or clustering, where for each...3937 days ago
Chromatin: From nucleosomes to chromosomes, 30 April - 2 May 2014
...of chromatin biology. The conference will focus on the latest developments in understanding chromatin structure and function, particularly gene expression and genome integrity.This mee...3923 days ago
Structural polymorphism analysis from NGS data
...g the adaptive capacity of agroecosystems it will be critical to establish a link between sequence variation, functional variation, gene/protein expression and phenotypic adaptation....3946 days ago
Postdoctoral position in bioinformatics @ Sweden
...group. We are focused on methods development for and analysis of next generation DNA sequencing, in particular comparative metagenomics and gene expression analysis (RNA-seq). We have s...3945 days ago
The Institute for Molecular Bioscience (IMB), Bailey Lab
Pattern recognition and computational biology MEME Suite software development; gene expression; mathematical modelling; gene regulation and transcription Specialization: Pattern recognition and modelling in computational biology Link @ http://www.imb.uq.edu.au/tim-bailey3945 days ago
3945 days ago
How Genes are Regulated: Transcription Factors
...w these dynamic proteins physically interact with DNA allows us to better understand and model their binding to DNA and their regulation of gene expression. Scientific Direction by the...3892 days ago
DNA is packaged in a chromosome experiment
...structures to eventually form a chromosome; this both compacts DNA and creates an added layer of regulatory control, which ensures correct gene expression. Nucleosomes are thought to c...3874 days ago
Read lines from input file – print lines that match a regular expression
#!/usr/bin/perl use strict; use warnings; my $line; #read the line-by-line for each line ask if it matches the regex print it if it matches while($line = ){...2914 days ago
Perl script to find coding regions in DNA sequences
...e ($line = ) { # extract the two values or columns with a regular expression # A group of letters and a...ence. To split the sequence in segments of length # three, a regular expression will be used searching for al...2153 days ago
Which of the following programming language is best for a bioinformatics beginner?
...ng language which is compatible with most bioinformatics tools or software. I basically want to do de-novo assembly, map reads, align reads, and expression analysis. Recommendations wel...3528 days ago
3899 days ago
BioGPS: Spotlight on the Gene Expression Atlas
BioGPS opened 2016 with a publication in Nucleic Acids Research, right after the New Year holiday. Throughout the year, new designs for the site were being created, reviewed, adjusted, reviewed, adjusted, and more review/adjustments in anticipation of a site redesign for 2017. A Plugin registrati...Tags: BioGPS, Spotlight, Gene, Expression, Atlas
2023 days ago
Tags: CroCo, program, detect, potential, cross, contaminations, HTS, assembled, transcriptomes, expression, quantification
1942 days ago
Comment on "Tools for Differential expression analysis"
...e for performing differential expression analysis, including: DES...and testing for differential expression. edgeR: Another R packag...inear model to model the gene expression data and provides methods for...ls available for differential expression analysis. The choice of tool...418 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...ed species. Validate the results: Validate the results of the synteny analysis by comparing them to other sources of genomic data, such as gene expression or functional analysis. Over...421 days ago