3530 days ago
3816 days ago
Five unique traits of effective computational biologist
...understand the complex biological mechanism. I highly recommend your to interact with biotech researchers and learn how do they explain their one graph (which they generally produce...3949 days ago
Five points for bioinformatics software/tools
...not the additional staff! Additionally, most of the functionality that you need in your analysis is already coded into the program. Need to plot a graph? Just click this button right...3706 days ago
InfoGenomeR: Integrative reconstruction of cancer genome karyotypes
...Integrative Framework for Genome Reconstruction that uses a breakpoint graph to model the connectivity amo...ific CNAs, and haplotype information to identify the optimal breakpoint graph representing cancer genomes....1095 days ago
RNA-Seq De novo Assembly Using Trinity
...e sequence data into many individual de Bruijn graphs, each representing the trans...a given gene or locus, and then processes each graph independently to extract full...nto clusters and constructs complete de Bruijn graphs for each cluster. Each clust...2964 days ago
Prepare for Coding Interview !
.../www. reddit.com/r/cscareerquestions/comments/206ajq/my_onsite_interview_experience_at_google/ #bottom-comments. 1. Data structures 2. Trees and Graph algorithms 3. Dynamic Progra...844 days ago
Genome Assembly Tools and Software - PART2 !!
...categories: string-based model and graph-based model. We therefore li...sm discovery. SAGE – String Graph Assembly of GEnomesSAGE ...RNA transcript sequences. StringGraph beta – String Graph Con...m-bandwidth paths in weighted read graphs and frequency estimation via...2684 days ago
Awesome perl frameworks, libraries and software - PART 2
...stein/Perl-GD - Perl GD module for bitmap graphics keiya/KeiSpade-CMS -...ntation in terms of AnyEvent agentzh/makefile-graphviz-pm - Perl CPAN module...rl-mysql - MySQL stats logging for Statsd/Graphite naoya/hadoop-streaming-fr...2493 days ago
3945 days ago
3945 days ago
BEReX : Biomedical Entity-Relation eXplorer
...rom these databases. Users search the integrated network by entering keywords and BEReX returns a sub-network matching the keywords. The resulting graph can be explored interactively...3839 days ago
3545 days ago
Post-doc position at LABGeM - Evry, France
...of innovative bioinformatics methods to explore metabolic networks and enzyme families. These methods will be based on protein family analysis and graph approaches combining genomic...3067 days ago
11th International Joint Conference on Biomedical Engineering Systems and Technologies
...ilable biological data. Areas of interest to this community include systems biology, sequence analysis, biostatistics, image analysis, network and graph models, scientific data manag...2648 days ago
3900 days ago
3900 days ago
Computational Biology in the 21st Century: Making Sense out of Massive Data
...ets will require not only faster computers; it will require smarter algorithms. We show how ideas from cutting-edge algorithms, including spectral graph theory and modern data struct...3901 days ago
2263 days ago
Estimate Genome Size with Jellyfish and R
jellyfish count -t 8 -C -m 19 -s 5G -o 19mer_out --min-qual-char=? /common/Tutorial/Genome_estimation/sample_read_1.fastq /common/Tutorial/Genome_estimation/sample_rea...2245 days ago
Comment on "Sibelia: A comparative genomics tool"
...ces file 2. Dot file with resulting de Bruijn graph All these files are descri...s down the computation. Resulting de Bruijn graph ------------------------- F...actually performed with the genome behind the graph model. Suppose that somewhe...1284 days ago
Comment on "KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies"
...the kmer “noise” is part of the final assembly? What do you think contamination would look like in the kmer plot? What can the kmer graph tell you about the ploidy of...1336 days ago