2541 days ago
List of motif discovery tools !
...ne the protein structure space. DILIMOT -- discovery of linear motifs in proteins Predict short linear motifs (3-8 residues) in a se...-- identifying signatures in protein termini Identify short linear signatures in protein termini...2004 days ago
Barrnap: Bacterial ribosomal RNA predictor
...tyle. NHMMER binaries for 64-bit Linux and Mac OS X are included and will be auto-detected. Multithreading is supported and one can expect roughly linear speed-ups with more CPUs.&nbs...2560 days ago
2939 days ago
Bio++ : C Language libraries for your biological need
...ctorial, etc.)Vector tools: element-wise functions, statistics (mean, var, sd, correlation, information theory)Classes for matrices implementation.Linear algebra: eigen decomposition,...3958 days ago
Genome Assembly Tools and Software - PART2 !!
...the sequences which can be used as shotgun reads. SLiQ – Simple linear Inequalities based Mate-Pair reads Filtering and ScaffoldingSLIQ , a set of simple linear inequalities derived from the...2696 days ago
3957 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...available: Intro to programming and graphics Data manipulation and functions Graphics for exploratory data analysis Introductory statistics Linear regression A Little Book...3790 days ago
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3958 days ago
DNA is packaged in a chromosome experiment
...used to pack the large eukaryotic genomes into the nucleus while still ensuring appropriate access to it (in mammalian cells approximately 2 m of linear DNA have to be packed into a...3887 days ago
3717 days ago
A multilayer perceptron (MLP) neural network in Perl
...ode by Phil Brierley #Translated into perl - ccolbourn Oct 2004 #################################################### #Tanh hidden neurons #Linear output neuron #To include...2926 days ago
2138 days ago
Understanding reads mapping and flags !
Linear Alignment: An alignment of a read to a single reference sequence that may include insertions, deletions, skips and clipping, but may not include direction changes (i.e. one portion of the alignment on forward strand and another portion of alignment on reverse strand). ...Tags: Linear, Chimeric, Supplementary, Primary, Secondary, Alignments
1847 days ago
Comment on "Tools for Differential expression analysis"
...differential expression analysis of RNA-Seq data. It uses a generalized linear model to model the count data...ferential expression analysis of microarray and RNA-Seq data. It uses a linear model to model the gene expre...431 days ago
Comment on "Which are the best statistical programming languages to study for a bioinformatician?"
... Yes Yes Yes Yes Linear Regression Yes... Yes Generalized Linear Models Yes &...3562 days ago