2531 days ago
List of motif discovery tools !
...ne the protein structure space. DILIMOT -- discovery of linear motifs in proteins Predict short linear motifs (3-8 residues) in a se...-- identifying signatures in protein termini Identify short linear signatures in protein termini...1994 days ago
Barrnap: Bacterial ribosomal RNA predictor
...tyle. NHMMER binaries for 64-bit Linux and Mac OS X are included and will be auto-detected. Multithreading is supported and one can expect roughly linear speed-ups with more CPUs.&nbs...2550 days ago
2929 days ago
Bio++ : C Language libraries for your biological need
...ctorial, etc.)Vector tools: element-wise functions, statistics (mean, var, sd, correlation, information theory)Classes for matrices implementation.Linear algebra: eigen decomposition,...3948 days ago
Genome Assembly Tools and Software - PART2 !!
...the sequences which can be used as shotgun reads. SLiQ – Simple linear Inequalities based Mate-Pair reads Filtering and ScaffoldingSLIQ , a set of simple linear inequalities derived from the...2686 days ago
3947 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...available: Intro to programming and graphics Data manipulation and functions Graphics for exploratory data analysis Introductory statistics Linear regression A Little Book...3780 days ago
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3948 days ago
DNA is packaged in a chromosome experiment
...used to pack the large eukaryotic genomes into the nucleus while still ensuring appropriate access to it (in mammalian cells approximately 2 m of linear DNA have to be packed into a...3877 days ago
3707 days ago
A multilayer perceptron (MLP) neural network in Perl
...ode by Phil Brierley #Translated into perl - ccolbourn Oct 2004 #################################################### #Tanh hidden neurons #Linear output neuron #To include...2916 days ago
2128 days ago
Comment on "Tools for Differential expression analysis"
...differential expression analysis of RNA-Seq data. It uses a generalized linear model to model the count data...ferential expression analysis of microarray and RNA-Seq data. It uses a linear model to model the gene expre...421 days ago
Comment on "Which are the best statistical programming languages to study for a bioinformatician?"
... Yes Yes Yes Yes Linear Regression Yes... Yes Generalized Linear Models Yes &...3552 days ago