BOL

Tools for building de novo transcriptome assembly https://www.sciencedirect.com/science/article/pii/S2214662817301032 #Trnscripttomics #Assembly

Minimizer-space de Bruijn graphs: Whole-genome assembly of long reads in minutes on a personal computer https://www.cell.com/cell-systems/fulltext/S2405-4712(21)00332-X #msDBG #Assembly #Genome

Genome assembly PPT http://rayan.chikhi.name/pdf/2018-evomics-assembly-kmers.pdf #Genome #Assembly #PPT #Ryan

New #phased #genome #assembly revealed, scandalous #rotifers have #homologous #chromosomes ! https://www.biorxiv.org/content/10.1101/2020.06.16.155473v1

#Improving draft #assemblies by iterative mapping and #assembly of short reads to eliminate #gaps https://genomebiology.biomedcentral.com/articles/10.1186/gb-2010-11-4-r41

#BlobToolKit can be used during #assembly to filter non-target DNA, helping researchers produce assemblies with high biological credibility. https://blobtoolkit.genomehubs.org/view #Genome #Blob #Con

Transcript assembly and quantification for RNA-Seq https://github.com/mpertea/stringtie2 #Transcript #assembly

Nanopore sequencing and #assembly of a human genome with ultra-long reads https://www.nature.com/articles/nbt.4060

Informatics for #RNA-seq: A web resource for analysis on the cloud https://github.com/griffithlab/rnaseq_tutorial/wiki #Scripts #Assembly

De novo genome assembly https://astrobiomike.github.io/genomics/de_novo_assembly #Genome #Assembly #DeNovo #Genome

Errors in sequence assembly and corrections (Bioinformatics) http://what-when-how.com/bioinformatics/errors-in-sequence-assembly-and-corrections-bioinformatics/ #Assembly #Error

Long read assembly workshop https://www.melbournebioinformatics.org.au/tutorials/tutorials/pacbio/ #Long #Reads #Assembly #PacBio #Learn #Tutorial #Workshop

https://bioinformaticsdotca.github.io/high-throughput_biology_2017 #NGS #Tutorial #Learn #Assembly

Machine learning meets genome assembly https://academic.oup.com/bib/advance-article-abstract/doi/10.1093/bib/bby072/5074612 #genome #assembly #machine #learning

samtools mpileup -uf reference.nt mapping.bam | bcftools call -c | vcfutils.pl vcf2fq > consensus.fasta #Genome #Assembly #Reference