BOL

https://www.biorxiv.org/content/10.1101/2020.01.22.914952v2.full.pdf+html #coronavirus #bat #genome

#BlobToolKit can be used during #assembly to filter non-target DNA, helping researchers produce assemblies with high biological credibility. https://blobtoolkit.genomehubs.org/view #Genome #Blob #Con

Graph reference genome https://vimeo.com/184983995 #Graph #Reference #Genome #GraphRef

Simple script to generate whole-genome coverage plots https://github.com/matted/genome_coverage_plotter #Coverage #Plot #Genome

A quick #guide for student-driven community #genome #annotation https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006682

Using R: #plotting the #genome on a line https://www.r-bloggers.com/using-r-plotting-the-genome-on-a-line/ . #plot #R

Human genome reads http://www.bcgsc.ca/downloads/btl/ntedit/paper/human/ #human #genome #reads #data

NGS Exercise.4 https://wiki.bits.vib.be/index.php/NGS_Exercise.4 #Exercise #Learn #Plot #Circos #Genome #NGS #Tutorial

De novo genome assembly https://astrobiomike.github.io/genomics/de_novo_assembly #Genome #Assembly #DeNovo #Genome

Machine learning meets genome assembly https://academic.oup.com/bib/advance-article-abstract/doi/10.1093/bib/bby072/5074612 #genome #assembly #machine #learning

samtools mpileup -uf reference.nt mapping.bam | bcftools call -c | vcfutils.pl vcf2fq > consensus.fasta #Genome #Assembly #Reference

The aim of this program suite is to support checks of #Sequence #Variant #Nomenclature according to the guidelines of the #Human #Genome #Variation Society. https://www.mutalyzer.nl/

Genome Information by Organism https://www.ncbi.nlm.nih.gov/genome/browse/#!/overview/ #Genome #information #NCBI

I recommend two technologies: long reads to get the genome right, short reads to get the bases right. #Genome #Assembly #Reads #LonfReads

Long reads assembly tutorial https://www.melbournebioinformatics.org.au/tutorials/tutorials/pacbio/ #Long #Reads #PacBio #assembly #Genome