54 days ago
3569 days ago
How to install Perl modules manually, using CPAN command, and other quick ways
...mile please, now you are ready with CPAN and can download modules in one line command. You can use one of t...cpancpan shell -- CPAN exploration and modules installation (v1.9205)ReadLine support available (maybe inst...3994 days ago
Five points for bioinformatics software/tools
...exactly what the program does. If you are so inclined, you can view all of the par...the program and see the logical flow of the pipeline. In addition, open source mak...coming to any conclusion. Even an error in two line code can alter your entire an...3751 days ago
Taverna Workflow Management System
...rkbench(the desktop client application) and the Taverna Server (which allows remote execution of workflows). Taverna is also available as a Command Line Tool for a quick execution of...3959 days ago
3697 days ago
Detect the sequence pattern and its location in fasta file with match and mismatches information.
This script is one of my old script to detect some centromeric pattern in chromosomes. User can also control the number of mismatches allowed through command line .. To run: perl centro.pl3912 days ago
2195 days ago
Bio++ : C Language libraries for your biological need
...sd, correlation, information theory)Classes for matrices implementation.Linear algebra: eigen decompositio...upper/lower case, etc.Applications: read options from a file or command lineetc. Some of the libraries ar...3992 days ago
3746 days ago
List of Bioinformatics and Computational Biology Journals
...e Artificial Intelligence Machine Learning Applied Bioinformatics Applied Genomics and Proteomics BMC Bioinformatics Online Journal of Bioinformatics (OJB) PSB On-Line Proceedings Bioinformatics:...3772 days ago
Best book Titles for Learning Bionformatics
...uldn’t know anything that we know today. There are several book, online and offile to read and I can'...on: Bioinfomatic Approach, I.F. Tsigelny, 2002, International University Line Introduction to Protein Arch...3961 days ago
3825 days ago
Breaking chromosomes to study cancer !!!
...rcomas. Chromosomal translocations have been well studied in cancer cell lines which are associated with tw...to induce chromosomal translocations for the first time in a human cell line and in primary cells. The stu...3623 days ago
Bioinformatics PhD studentship available in New Zealand
...importance of transcriptional control has been explored in a burgeoning line of research over several deca...dent. Applicants must have a BSc(Hons) or MSc degree in a relevant discipline and a willingness to learn an...3992 days ago
Ph.D. Fellowship (Computational Biology/Bioinformatics) : Cork, Ireland : Cork, Ireland
...pected to have B.S. or M.S. degree in the disciplines such as Computer Science, St...ates with the backgrounds in Life Science disciplines such as Bioinformatics, Comp...processing of your application use the subject line: ‘Ph.D. computational’. All a...3960 days ago
3940 days ago
3268 days ago
Bioinformatician special skills !!
...and division are the same. Pretty codes for them ... /([+-]?\ *(?:\d+(?:\.\d*)?|\.\d+)(?:[eE]([+-]?\d+))?)/; next unless /((?:(?!\\$).)*)/; $line =~ /^(.+)(e|r)(.*)$/; /"(?:[...3940 days ago
3224 days ago
PHP Tutorial 1 - Introduction (PHP For Beginners)
In this tutorial we go over a short presentation on what PHP is, what is required to learn it and what we will be covering further down the line. This video will hopefully introduce...3693 days ago
3564 days ago
Download genome using NCBI esearch command line !
#Download using command line "NC_005956.1" / "CP003784.1" esearch -db nucleotide -query "NC_005956.1" | efetch -format fasta > seq1.fa esearch -db nucleotide -query "CP003784...1145 days ago
R script to visualize fastANI core-genome comparison
...I core-genome comparison # Usage: Rscript # Output: .pdf # Uses genoPlotR package: http://genoplotr.r-forge.r-project.org #Parse command line arguments query_fasta=comman...1145 days ago
Comment on "Short-read assembly using Spades !"
...tools such as Trimmomatic or FastQC. Running SPAdes: After quality control, the next step is to run SPAdes. This can be done through a command-line interface or a graphical user...459 days ago
Comment on "Tools for Sequence translation !"
...andle multiple sequences at once. EMBOSS Transeq: This is a command-line tool that can translate nucle...or RNA sequences into protein sequences. SeqKit: This is a command-line tool that can perform several...465 days ago