Results for "line"
Users
About me: BioinformaticsOnline(BOL) founder. http://bioinformaticsonline.com/about Within the broad domain of bioinformatics and computat...and amniotes evolution. I (We) develop certain computational pipeline, and algorithms to harness th...Brief description: BioinformaticsOnline(BOL) adminContact email: info@bioinformaticsonline.comWebsite: http://bioinformaticsonline.com/38 days ago
- Skills: ChIP-seq pipeline tools
3552 days ago
- +5 more Users
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
...mile please, now you are ready with CPAN and can download modules in one line command. You can use one of t...cpancpan shell -- CPAN exploration and modules installation (v1.9205)ReadLine support available (maybe inst...3977 days ago
Five points for bioinformatics software/tools
...exactly what the program does. If you are so inclined, you can view all of the par...the program and see the logical flow of the pipeline. In addition, open source mak...coming to any conclusion. Even an error in two line code can alter your entire an...3735 days ago
- +17 more Blogs
Bookmarks
Taverna Workflow Management System
...rkbench(the desktop client application) and the Taverna Server (which allows remote execution of workflows). Taverna is also available as a Command Line Tool for a quick execution of...3943 days ago
- ...ls:* CuffDiff* EdgeR* DESeq2 Advanced Command Line Tutorial Graphical Output...es a list of likely variants in VCF format Pipelines are for those who are comfor...or variant calling in exome data.To run the pipeline you will need Rubra: https://...
3680 days ago
- +75 more Bookmarks
Files
Detect the sequence pattern and its location in fasta file with match and mismatches information.
This script is one of my old script to detect some centromeric pattern in chromosomes. User can also control the number of mismatches allowed through command line .. To run: perl centro.pl3895 days ago
- ...ng_edge.pl pairedEdges_i0 contig_length.dat 100 2Illegal division by zero at /home/urbe/Tools/OPERA-LG_v2.0.6/bin//filter_conflicting_edge.pl line 93.readline() on closed filehandle FILE a...
2179 days ago
Pages
Bio++ : C Language libraries for your biological need
...sd, correlation, information theory)Classes for matrices implementation.Linear algebra: eigen decompositio...upper/lower case, etc.Applications: read options from a file or command lineetc. Some of the libraries ar...3975 days ago
- ...ncrypt the data being sent. Using the Blowfish cipher has been shown to increase speed. This can be done by using option -c blowfish in the command line. $ scp -c b...
3729 days ago
- +12 more Pages
Top-level pages
List of Bioinformatics and Computational Biology Journals
...e Artificial Intelligence Machine Learning Applied Bioinformatics Applied Genomics and Proteomics BMC Bioinformatics Online Journal of Bioinformatics (OJB) PSB On-Line Proceedings Bioinformatics:...3755 days ago
Best book Titles for Learning Bionformatics
...uldn’t know anything that we know today. There are several book, online and offile to read and I can'...on: Bioinfomatic Approach, I.F. Tsigelny, 2002, International University Line Introduction to Protein Arch...3945 days ago
- +24 more Top-level pages
Wire posts
News
- ...ve. They extracted its DNA and sequenced the genome of the mitochondria or mtDNA, a small part of the genome that is passed down along the maternal line and occurs in many copies per...
3809 days ago
Breaking chromosomes to study cancer !!!
...rcomas. Chromosomal translocations have been well studied in cancer cell lines which are associated with tw...to induce chromosomal translocations for the first time in a human cell line and in primary cells. The stu...3606 days ago
- +2 more News
Opportunity posts
Bioinformatics PhD studentship available in New Zealand
...importance of transcriptional control has been explored in a burgeoning line of research over several deca...dent. Applicants must have a BSc(Hons) or MSc degree in a relevant discipline and a willingness to learn an...3975 days ago
Ph.D. Fellowship (Computational Biology/Bioinformatics) : Cork, Ireland : Cork, Ireland
...pected to have B.S. or M.S. degree in the disciplines such as Computer Science, St...ates with the backgrounds in Life Science disciplines such as Bioinformatics, Comp...processing of your application use the subject line: ‘Ph.D. computational’. All a...3943 days ago
- +18 more Opportunity posts
ResearchLabs posts
- Bioinformatics relevant research topics are: genomic scale studies endogenous mechanisms of mutations, germ line and somatic computational aspects of immunology in cancer sig...
3923 days ago
- ...ences. The users of Rajasthan, Jaipur in particular, are using facilities available at the Bioinformatics Centre extensively. The centre has leased line Internet connection as well l...
3252 days ago
Fun
Bioinformatician special skills !!
...and division are the same. Pretty codes for them ... /([+-]?\ *(?:\d+(?:\.\d*)?|\.\d+)(?:[eE]([+-]?\d+))?)/; next unless /((?:(?!\\$).)*)/; $line =~ /^(.+)(e|r)(.*)$/; /"(?:[...3923 days ago
- ...heritance! Why did bioinformatician always works on the command line? A: Because they don't want...orted polymorphism. Why did bioinformatician prefer awk, PerlOneliner? A: Because even computer c...
3208 days ago
Video
PHP Tutorial 1 - Introduction (PHP For Beginners)
In this tutorial we go over a short presentation on what PHP is, what is required to learn it and what we will be covering further down the line. This video will hopefully introduce...3676 days ago
- Presented July 30, 2014 and covering: an NCBI BLAST AMI at Amazon Web Services; introduction to AWS and setting up an instance; running command line BLAST and using the BLAST URL API via the AMI; and answers to attendee questions.
3547 days ago
Bio-Scripts
Download genome using NCBI esearch command line !
#Download using command line "NC_005956.1" / "CP003784.1" esearch -db nucleotide -query "NC_005956.1" | efetch -format fasta > seq1.fa esearch -db nucleotide -query "CP003784...1129 days ago
R script to visualize fastANI core-genome comparison
...I core-genome comparison # Usage: Rscript # Output: .pdf # Uses genoPlotR package: http://genoplotr.r-forge.r-project.org #Parse command line arguments query_fasta=comman...1129 days ago
- +69 more Bio-Scripts
Comments
Comment on "Short-read assembly using Spades !"
...tools such as Trimmomatic or FastQC. Running SPAdes: After quality control, the next step is to run SPAdes. This can be done through a command-line interface or a graphical user...443 days ago
Comment on "Tools for Sequence translation !"
...andle multiple sequences at once. EMBOSS Transeq: This is a command-line tool that can translate nucle...or RNA sequences into protein sequences. SeqKit: This is a command-line tool that can perform several...448 days ago
- +15 more Comments
