Tools to detect synteny blocks regions among multiple genomes
...ents. Sibelia will also be helpful for the evolutionary and genome rearrangement studies for multiple strains of microorganisms. GSV (http://cas-bioinfo.cas.unt.edu/gsv/homepage.php) Genome Synteny...2603 days ago
List of gene ontology software and tools
The Gene Ontology (GO) is a set of associations from biological phrases to specific genes that are either chosen by trained curators or generated automatically. GO is...3702 days ago
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Bio++ : C Language libraries for your biological need
...sProt,Algorithms for plotting trees, with support for vector formats like SVG, Fig or LaTeX-PGF.So get rel...kers.Statistics on synonymous and non synonymous sites for coding sequencesVarious 'Neutrality' statistics...3940 days ago
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Most Commonly used Awk by Bioinformatician
...print;l[$2]=1}' input.txt count different words (wc): awk '{for(i=1;i!=NF;++i)c[$i]++}END{for (x in c) print x,c[x]}' input.txt deal with simple CSV: awk -F, '{print $1,$2}' su...3905 days ago
Webinar: Wednesday 21 August 2013 at Noon EDT
...cloning and marker-assisted breeding. http://www.extension.org/pages/67926/upcoming-webinar:-selective-sequencing-through-combinatorial-pooling#.UggsVuHyPqU3912 days ago
Surrogate Variable Analysis (SVA)
The sva package contains functions for removi...roughput experiment. Specifically, the sva package contains functions f...deled, or latent sources of noise. The sva package can be used to remov...nductor.org/packages/release/bioc/html/sva.html3468 days ago
Structural polymorphism analysis from NGS data
...ts with pipelines requirements. He/she will be hosted by a bioinformatics/informatics team (7 people) (http://moulon.inra.fr/index.php/fr/equipestransversales/atelier-de-bioinformat...3941 days ago
Bioinformatics SVIMS Project Assistant Walk IN
...nterview for recruitment of Project Assistant in SVIMS Bioinformatics centre unde...hrough Bioinformatics” on 25.09.2014 at 11 AM in SVIMS, Tirupati. The engagement...lification etc., before the interview committee, SVIMS University, Tirupati. 2...3507 days ago
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Sequence Viewer: Download Transcripts, Exons and Proteins
How to download FASTA sequence for certain gene features while in the NCBI's Sequence Viewer. Sequence Viewer homepage: www.ncbi.nlm.nih.gov/projects/sviewer/ Sequence Viewer playlist: https://www.youtube.com/playlist?list=PL76D7EE6A6A8AC1C33512 days ago
Transpose the file coordinates and plot dendrogram in R
#Save this as tr.awk { for (i=1; i2610 days ago
Read a tab delimited file and search with perl
use strict; use warnings; use Data::Dumper; use Text::CSV; use IO::Handle; my $file = "/home/urbe/Tools/Alienomics_v0.1/Alienomics/output/intermediate_files/rRNA/refGene.megablast"; open my $fh, "[0]\n"; warn Dumper $row; # To see the structure }2518 days ago
Tryst with a Bioinformatician # Dr Altan Kara
...rokaryotic two-component systems. In this project, I will be in collaboration with Prof. Maria Kontoyianni, SIUE: Southern Illinois University Edwardsville, School of Pharmacy....2355 days ago
Hagfish - assess an assembly through creative use of coverage plots
Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) experiments. Hagfish builds on the concept of coverage plots and aims to assist (amongst others) in quality control of de novo genome assembly or identification of structural variation in a genome ...Tags: Bioinformatics, Hagfish, Assess, Assembly, Coverage, Plots, NGS, Structure, Variation, SV, Assembly, Genome
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Tags: Bioinformatics, Analysis, NGS, Lumpy, SV, Variation, Structure, Genome
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Comment on "Tools for RNA classification"
...provides a comprehensive resource for RNA classification. RNAcode: RNAcode is a machine learning-based tool that uses a support vector machine (SVM) algorithm to classify RNA s...413 days ago
Comment on "List of non-commercial NGS genotype-calling software"
Delly – Structural variant discovery by integrated paired-end and split-read analysis. [ paper-2012 ] lumpy – lumpy: a general probab...1135 days ago