BOL

Understanding N50 http://jermdemo.blogspot.be/2008/11/calculating-n50-from-velvet-output.html #N50 #Assembly #Genome #Contigs

DiscovarDenovo assembly ppt https://banana-slug.soe.ucsc.edu/_media/team_5_report_1.pdf #PPT #Assembly #Help #Steps

De #Bruijn #Graph #assembly http://www.cs.jhu.edu/~langmea/resources/lecture_notes/assembly_dbg.pdf

#ConPADE: Genome #Assembly Ploidy Estimation from #Next-Generation Sequencing Data http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004229

Consensus assembly and allele interpretation pipeline. https://github.com/nmdp-bioinformatics/pipeline #Pipeline #Bioinformatics #Assembly

An Opinionated History of Genome Assembly Algorithms http://www.homolog.us/blogs/blog/2014/02/21/opinionated-history-genome-assembly-algorithms/ #NGS #Assembly #History

De novo genome assembly: what every biologist should know http://www.nature.com/nmeth/journal/v9/n4/full/nmeth.1935.html #NGS #Assembly #Genome #Sequencing #DeNovo

Genome Assembly & Analysis Tool Box (GATB)!! http://gatb.inria.fr/ #genome #assembly

Genome assembly algorithms http://www.nature.com/subjects/genome-assembly-algorithms #NGS #Assembly #Algorithms #Genome #Tools

SAGE: String-overlap Assembly of GEnomes http://www.biomedcentral.com/1471-2105/15/302/abstract #Genome #SAGE #Assembly

Ragout—a reference-assisted assembly tool for bacterial genomes http://bioinformatics.oxfordjournals.org/content/30/12/i302.short #Genome #Assembly #Reference #Ragout #Bacteria

114 different tools out there for DNA/RNA assembly https://twitter.com/kbradnam/status/479039027249971201/photo/1 #Assembly #Genome #Tools

Maq: Mapping and Assembly with Qualities http://maq.sourceforge.net/ #Maq #Mapping #Assembly #Qualities

Assemble short reads http://ged.msu.edu/angus/tutorials/short-read-assembly.html #Tutorial #ABySS #Bacteria #Reads #Assembly #Genomics #NGS

Bacterial genome assembly tips using Valvet http://pathogenomics.bham.ac.uk/blog/2009/09/tips-for-de-novo-bacterial-genome-assembly/ #Assembly #NGS #Bacteria #Genome #Tricks #Tips #Velvet